miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|190252851|gb|FG725158.1|FG725158 TTTTTTTTTTTTTTTTTTAGATTTTAAAAGCCTTTTATTTCACAGACATGATACCTTTACAAAGACATGGAAAATTGACA
TGATCACATAGTGGAATGGCGAGACATCCTACTGCTGCACTCCTTCATAGTAACACTGCCCCAGCTAACAAGCAAGCTAC
GTGTGTTAAGCTGAAAAGAACATGAAGATGTGGCATGCAGCTAAGAGATGTAAGGGAGCAGATCTAGTATTCCTCTCCTT
CCTCTTCCCCTTCCCCTTCAATAGAATCCACACCCACTTCTTCATAATCCTTTTCCAGGGCAGCCATGTCTTCCCGGGCC
TCGGAGAACTCTCCTTCCTCCATCCCCTCCCCAACGTACCAGTGGACGAAGGCACGCTTGGCATACATCAGGTCAAACTT
ATGATCCAGGCGAGGGTCACATTTCACCATCTGGTTGGCCGGCTCAAAGCAAGCATTGGTGATCTCGGCTACAGAAAGCT
GTTCATGGTAAGCTTTCTCAGCAGAGATGACCGGGGCATAGGTGGCCAAGGGGAAATGGATACGGGGATAGGGCACCAAG
TTGGTCTGGAATTCGGTCAGATCTACATTCAGGGCACCATCAAATCGTAGGGAGGCTGTGATGGAGGACACAGTCTGGCT
GATCAGGCGGTTAAGGTTGGTGTAAGTGGGGCGCTCGATGTCGAGGTTCCTGCGACATATGTCATAGATGGCTTCATTGT
CTACCATAAAGGCGCAGTCGGAGTGCTCCAGCGTGGTGTGGGTGGTCAGAGTGGGAGTCGTAGGGCTCACTACAGCTGTG
GAGACTTGAGGGCTGGGTAG




Most similar to sp|Q5XIF6|TBA4A_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
           GN=Tuba4a PE=2 SV=1
          Length = 448

 Score =  232 bits (591), Expect = 3e-60
 Identities = 113/114 (99%), Positives = 113/114 (99%)
 Frame = -1

Query: 751 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQTVSSITASLRFDGALNVDLTE 572
           LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQ VSSITASLRFDGALNVDLTE
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTE 254

Query: 571 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 410
           FQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR
Sbjct: 255 FQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308



 Score =  106 bits (265), Expect = 2e-22
 Identities = 49/50 (98%), Positives = 50/50 (100%)
 Frame = -1

Query: 412 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS 263
           RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG+DS
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGIDS 439